HL_8VKV_074

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8VKV|1|a|U|1729, 8VKV|1|a|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_074 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.2775

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VKV|1|a|C|1727
8VKV|1|a|C|1728
8VKV|1|a|U|1729
8VKV|1|a|C|1730
8VKV|1|a|G|1731
8VKV|1|a|C|1732
8VKV|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains