HL_8VKV_093

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VKV|1|a|G|2751, 8VKV|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_093 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1232

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

8VKV|1|a|C|2745
8VKV|1|a|U|2746
8VKV|1|a|G|2747
8VKV|1|a|A|2748
8VKV|1|a|A|2749
8VKV|1|a|A|2750
8VKV|1|a|G|2751
8VKV|1|a|C|2752
8VKV|1|a|A|2753
8VKV|1|a|U|2754
8VKV|1|a|C|2755
8VKV|1|a|U|2756
8VKV|1|a|A|2757
8VKV|1|a|A|2758
8VKV|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13