HL_8VKV_094

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8VKV|1|a|U|2797, 8VKV|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_094 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3055

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VKV|1|a|C|2795
8VKV|1|a|U|2796
8VKV|1|a|U|2797
8VKV|1|a|U|2798
8VKV|1|a|A|2799
8VKV|1|a|A|2800
8VKV|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains