HL_8VKV_099

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

8VKV|1|d|U|87, 8VKV|1|d|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_099 not in the Motif Atlas

Geometric match to HL_8P9A_151

Geometric discrepancy: 0.1048

The information below is about HL_8P9A_151

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8VKV|1|d|G|86
8VKV|1|d|U|87
8VKV|1|d|C|88
8VKV|1|d|U|89
8VKV|1|d|C|90

Current chains

Chain d

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain v

50S ribosomal protein L16