HL_8VKW_025

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGUUGAAGAC

Length

10 nucleotides

Bulged bases

8VKW|1|A|U|862, 8VKW|1|A|G|866, 8VKW|1|A|A|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_025 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1783

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

8VKW|1|A|G|859
8VKW|1|A|G|860
8VKW|1|A|U|861
8VKW|1|A|U|862
8VKW|1|A|G|863
8VKW|1|A|A|864
8VKW|1|A|A|865
8VKW|1|A|G|866
8VKW|1|A|A|867
8VKW|1|A|C|868

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32

Chain d

50S ribosomal protein L34