HL_8VKW_047

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUUUACG

Length

7 nucleotides

Bulged bases

8VKW|1|A|U|1946, 8VKW|1|A|C|1949

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_047 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3498

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8VKW|1|A|C|1944
8VKW|1|A|U|1945
8VKW|1|A|U|1946
8VKW|1|A|U|1947
8VKW|1|A|A|1948
8VKW|1|A|C|1949
8VKW|1|A|G|1950

Current chains

Chain A

23S ribosomal RNA

Nearby chains