HL_8VKW_056

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8VKW|1|A|A|2491, 8VKW|1|A|A|2492, 8VKW|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_056 not in the Motif Atlas

Homologous match to HL_9DFE_052

Geometric discrepancy: 0.14

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8VKW|1|A|C|2488
8VKW|1|A|U|2489
8VKW|1|A|A|2490
8VKW|1|A|A|2491
8VKW|1|A|A|2492
8VKW|1|A|A|2493
8VKW|1|A|U|2494
8VKW|1|A|G|2495
8VKW|1|A|U|2496
8VKW|1|A|A|2497
8VKW|1|A|A|2498
8VKW|1|A|C|2499
8VKW|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27