HL_9DFE_052

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9DFE|1|1A|A|2268, 9DFE|1|1A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9DFE|1|1A|C|2264
9DFE|1|1A|U|2265
9DFE|1|1A|A|2266
9DFE|1|1A|A|2267
9DFE|1|1A|A|2268
9DFE|1|1A|A|2269
9DFE|1|1A|G|2270
9DFE|1|1A|G|2271
9DFE|1|1A|U|2272
9DFE|1|1A|A|2273
9DFE|1|1A|A|2274
9DFE|1|1A|C|2275
9DFE|1|1A|G|2276

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25