HL_8VKW_059

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGGACAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_059 not in the Motif Atlas

Homologous match to HL_9DFE_055

Geometric discrepancy: 0.1861

The information below is about HL_9DFE_055

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VKW|1|A|C|2579
8VKW|1|A|G|2580
8VKW|1|A|G|2581
8VKW|1|A|A|2582
8VKW|1|A|C|2583
8VKW|1|A|A|2584
8VKW|1|A|U|2585
8VKW|1|A|G|2586

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain X

50S ribosomal protein L27

Chain e

50S ribosomal protein L35