HL_8VKW_068

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VKW|1|A|G|2975, 8VKW|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_068 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1559

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VKW|1|A|C|2969
8VKW|1|A|U|2970
8VKW|1|A|G|2971
8VKW|1|A|A|2972
8VKW|1|A|A|2973
8VKW|1|A|A|2974
8VKW|1|A|G|2975
8VKW|1|A|C|2976
8VKW|1|A|A|2977
8VKW|1|A|U|2978
8VKW|1|A|C|2979
8VKW|1|A|U|2980
8VKW|1|A|A|2981
8VKW|1|A|A|2982
8VKW|1|A|G|2983

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36