HL_8VL1_014

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VL1_014 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.0775

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VL1|1|D|A|320
8VL1|1|D|A|321
8VL1|1|D|C|322
8VL1|1|D|U|323
8VL1|1|D|G|324
8VL1|1|D|A|325
8VL1|1|D|G|326
8VL1|1|D|A|327
8VL1|1|D|C|328
8VL1|1|D|A|329
8VL1|1|D|C|330
8VL1|1|D|G|331
8VL1|1|D|G|332
8VL1|1|D|U|333

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16