HL_8VL1_047

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8VL1|1|a|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VL1_047 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1023

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VL1|1|a|G|410
8VL1|1|a|G|411
8VL1|1|a|A|412
8VL1|1|a|C|413
8VL1|1|a|C|414
8VL1|1|a|A|415
8VL1|1|a|U|416
8VL1|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15