HL_8VL1_084

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VL1_084 not in the Motif Atlas

Geometric match to HL_5J7L_189

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8VL1|1|a|U|2324
8VL1|1|a|G|2325
8VL1|1|a|C|2326
8VL1|1|a|A|2327
8VL1|1|a|A|2328
8VL1|1|a|U|2329
8VL1|1|a|G|2330
8VL1|1|a|G|2331

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16