HL_8VM9_006

3D structure

PDB id

8VM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus B14 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

8VM9|1|R|A|58, 8VM9|1|R|A|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22584.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

22

Unit IDs

8VM9|1|R|G|57
8VM9|1|R|A|58
8VM9|1|R|A|59
8VM9|1|R|A|60
8VM9|1|R|C|61
8VM9|1|R|A|62
8VM9|1|R|C|63

Current chains

Chain R

RNA (85-MER)

Nearby chains

Chain B

Light Chain of Fab BL3-6

Chain H

Heavy Chain of Fab BL3-6

Chain L

Light Chain of Fab BL3-6