3D structure

PDB id
8VMA (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6
Experimental method
X-RAY DIFFRACTION
Resolution
2.54 Å

Loop

Sequence
CACG
Length
4 nucleotides
Bulged bases
8VMA|1|C|A|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38927.6
Basepair signature
cWW-F
Number of instances in this motif group
34

Unit IDs

8VMA|1|C|C|37
8VMA|1|C|A|38
8VMA|1|C|C|39
8VMA|1|C|G|40

Current chains

Chain C
RNA (88-MER)

Nearby chains

Chain L
Light Chain of Fab BL3-6

Coloring options:

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