Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8VMA_0021/C/37:40Mini UNCG
HL_90436.1
HL_8VMA_0031/C/60:66Fab BL3-6 binding hairpin with tSW
HL_64036.1
HL_8VMA_0051/R/37:40Mini UNCG with extended bulge
geometric
HL_7A0S_017
HL_90436.1
HL_8VMA_0061/R/60:66Fab BL3-6 binding hairpin with tSW
geometric
HL_6DB9_001
NA

Problematic loops

#loop idProblemSequence
HL_8VMA_001No text annotation
HL_8VMA_004No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8VMA_0011/C/16:19,
1/C/22:26
Tandem non-canonical cWW pairs
IL_60988.1
IL_8VMA_0021/C/36:37,
1/C/40:42
Single bulged U
IL_97561.1
IL_8VMA_0031/C/46:48,
1/C/78:79
Single bulged A
IL_14190.1
IL_8VMA_0041/C/51:55,
1/C/71:75
Triple non-canonical cWW pairs
IL_71154.1
IL_8VMA_0061/R/16:19,
1/R/23:26
No text annotation
IL_8VMA_0071/R/36:37,
1/R/40:42
Single bulged U
geometric
IL_5J7L_298
NA
IL_8VMA_0081/R/46:48,
1/R/78:79
Single bulged A
geometric
IL_8VM9_003
IL_14190.1
IL_8VMA_0091/R/51:55,
1/R/71:75
Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_71154.1

Problematic loops

#loop idProblemSequence
IL_8VMA_005Intercalated cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J4_8VMA_0011/C/8:9,
1/C/33:34,
1/C/44:45,
1/C/80:81
No text annotation
J4_58832.1
J4_8VMA_0021/R/8:9,
1/R/33:34,
1/R/44:45,
1/R/80:81
No text annotation
homologous
J4_8VMA_001
J4_58832.1

Problematic loops

No problematic loops


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