8VMA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8VMA_002 | 1/C/37:40 | Mini UNCG HL_48778.2 | ||
| HL_8VMA_003 | 1/C/60:66 | Fab BL3-6 binding hairpin with tSW HL_22584.6 | ||
| HL_8VMA_005 | 1/R/37:40 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_48778.2 | |
| HL_8VMA_006 | 1/R/60:66 | Fab BL3-6 binding hairpin with tSW | geometric HL_6DB9_001 HL_22584.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8VMA_001 | No text annotation | ||
| HL_8VMA_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8VMA_001 | 1/C/16:19, 1/C/22:26 | Tandem non-canonical cWW pairs IL_64231.5 | ||
| IL_8VMA_002 | 1/C/36:37, 1/C/40:42 | Single bulged U IL_89505.4 | ||
| IL_8VMA_003 | 1/C/46:48, 1/C/78:79 | Single bulged A IL_31462.7 | ||
| IL_8VMA_004 | 1/C/51:55, 1/C/71:75 | Triple non-canonical cWW pairs IL_49751.4 | ||
| IL_8VMA_006 | 1/R/16:19, 1/R/23:26 | No text annotation | ||
| IL_8VMA_007 | 1/R/36:37, 1/R/40:42 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_8VMA_008 | 1/R/46:48, 1/R/78:79 | Single bulged A | geometric IL_8VM9_003 IL_31462.7 | |
| IL_8VMA_009 | 1/R/51:55, 1/R/71:75 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_49751.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8VMA_005 | Intercalated cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_8VMA_001 | 1/C/8:9, 1/C/33:34, 1/C/44:45, 1/C/80:81 | No text annotation J4_00691.3 | ||
| J4_8VMA_002 | 1/R/8:9, 1/R/33:34, 1/R/44:45, 1/R/80:81 | No text annotation | homologous J4_8VMA_001 J4_00691.3 |
Problematic loops
No problematic loops
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