HL_8VMA_005

3D structure

PDB id

8VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.54 Å

Loop

Sequence

CACG

Length

4 nucleotides

Bulged bases

8VMA|1|R|A|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VMA_005 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1175

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8VMA|1|R|C|37
8VMA|1|R|A|38
8VMA|1|R|C|39
8VMA|1|R|G|40

Current chains

Chain R

RNA (88-MER)

Nearby chains