HL_8VOO_020
3D structure
- PDB id
- 8VOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VOO_020 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.075
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VOO|1|D|C|689
8VOO|1|D|G|690
8VOO|1|D|G|691
8VOO|1|D|U|692
8VOO|1|D|G|693
8VOO|1|D|A|694
8VOO|1|D|A|695
8VOO|1|D|A|696
8VOO|1|D|U|697
8VOO|1|D|G|698
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain F
- 30S ribosomal protein S21
- Chain M
- 30S ribosomal protein S7
- Chain Q
- 30S ribosomal protein S11
Coloring options: