HL_8VOO_047

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8VOO|1|a|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOO_047 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1023

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VOO|1|a|G|410
8VOO|1|a|G|411
8VOO|1|a|A|412
8VOO|1|a|C|413
8VOO|1|a|C|414
8VOO|1|a|A|415
8VOO|1|a|U|416
8VOO|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15