HL_8VOP_043

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8VOP|1|a|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_043 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.0889

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8VOP|1|a|C|305
8VOP|1|a|U|306
8VOP|1|a|G|307
8VOP|1|a|G|308
8VOP|1|a|A|309
8VOP|1|a|A|310
8VOP|1|a|A|311
8VOP|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24