8VOP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8VOP_001 | No text annotation | ||
| HL_8VOP_002 | No text annotation | ||
| HL_8VOP_003 | T-loop with 2 stacked bulged bases | ||
| HL_8VOP_004 | No text annotation | ||
| HL_8VOP_005 | No text annotation | ||
| HL_8VOP_006 | T-loop with 2 stacked bulged bases | ||
| HL_8VOP_007 | No text annotation | ||
| HL_8VOP_008 | No text annotation | ||
| HL_8VOP_009 | GNRA | ||
| HL_8VOP_010 | GNRA | ||
| HL_8VOP_011 | No text annotation | ||
| HL_8VOP_012 | GNRA related | ||
| HL_8VOP_013 | GNRA | ||
| HL_8VOP_014 | No text annotation | ||
| HL_8VOP_015 | UNCG | ||
| HL_8VOP_016 | GNRA | ||
| HL_8VOP_017 | UNCG | ||
| HL_8VOP_018 | GNRA wlth extra near cWW | ||
| HL_8VOP_019 | GNRA-like with tWH | ||
| HL_8VOP_020 | No text annotation | ||
| HL_8VOP_021 | GNRA | ||
| HL_8VOP_022 | No text annotation | ||
| HL_8VOP_023 | No text annotation | ||
| HL_8VOP_024 | GNRA | ||
| HL_8VOP_025 | GNRA | ||
| HL_8VOP_026 | GNRA | ||
| HL_8VOP_027 | GNRA | ||
| HL_8VOP_028 | T-loop related | ||
| HL_8VOP_029 | No text annotation | ||
| HL_8VOP_030 | GNRA | ||
| HL_8VOP_031 | GNRA | ||
| HL_8VOP_032 | T-loop with 3 stacked bulged bases | ||
| HL_8VOP_033 | No text annotation | ||
| HL_8VOP_034 | UNCG | ||
| HL_8VOP_035 | No text annotation | ||
| HL_8VOP_036 | No text annotation | ||
| HL_8VOP_037 | No text annotation | ||
| HL_8VOP_038 | UNCG | ||
| HL_8VOP_039 | No text annotation | ||
| HL_8VOP_040 | No text annotation | ||
| HL_8VOP_041 | No text annotation | ||
| HL_8VOP_042 | No text annotation | ||
| HL_8VOP_043 | T-loop with 2 stacked bulged bases | ||
| HL_8VOP_044 | No text annotation | ||
| HL_8VOP_045 | T-loop with unstacked turn | ||
| HL_8VOP_046 | No text annotation | ||
| HL_8VOP_047 | Pseudoknot geometry | ||
| HL_8VOP_048 | GNRA | ||
| HL_8VOP_049 | GNRA | ||
| HL_8VOP_050 | No text annotation | ||
| HL_8VOP_051 | T-loop with 2 stacked bulged bases | ||
| HL_8VOP_052 | No text annotation | ||
| HL_8VOP_053 | GNRA | ||
| HL_8VOP_054 | No text annotation | ||
| HL_8VOP_055 | GNRA wlth tandem sheared | ||
| HL_8VOP_056 | No text annotation | ||
| HL_8VOP_057 | No text annotation | ||
| HL_8VOP_058 | No text annotation | ||
| HL_8VOP_059 | No text annotation | ||
| HL_8VOP_060 | No text annotation | ||
| HL_8VOP_061 | GNRA wlth tandem sheared | ||
| HL_8VOP_062 | No text annotation | ||
| HL_8VOP_063 | GNRA | ||
| HL_8VOP_064 | T-loop with 2 stacked bulged bases | ||
| HL_8VOP_065 | Pseudoknot geometry with 3' bulge | ||
| HL_8VOP_066 | GNRA | ||
| HL_8VOP_067 | No text annotation | ||
| HL_8VOP_068 | Mini UNCG with extended bulge | ||
| HL_8VOP_069 | Pseudoknot geometry with 3' bulge | ||
| HL_8VOP_070 | UNCG | ||
| HL_8VOP_071 | Mini UNCG | ||
| HL_8VOP_072 | GNRA | ||
| HL_8VOP_073 | UNCG | ||
| HL_8VOP_074 | No text annotation | ||
| HL_8VOP_075 | No text annotation | ||
| HL_8VOP_076 | No text annotation | ||
| HL_8VOP_077 | GNRA related | ||
| HL_8VOP_078 | GNRA variation | ||
| HL_8VOP_079 | No text annotation | ||
| HL_8VOP_080 | UNCG | ||
| HL_8VOP_081 | No text annotation | ||
| HL_8VOP_082 | No text annotation | ||
| HL_8VOP_083 | No text annotation | ||
| HL_8VOP_084 | Pseudoknot geometry | ||
| HL_8VOP_085 | GNRA | ||
| HL_8VOP_086 | GNRA | ||
| HL_8VOP_087 | No text annotation | ||
| HL_8VOP_088 | No text annotation | ||
| HL_8VOP_089 | GNRA variation | ||
| HL_8VOP_090 | GNRA | ||
| HL_8VOP_091 | GNRA | ||
| HL_8VOP_092 | Ribsomal LSU H95 | ||
| HL_8VOP_093 | No text annotation | ||
| HL_8VOP_094 | No text annotation | ||
| HL_8VOP_095 | No text annotation | ||
| HL_8VOP_096 | GNRA | ||
| HL_8VOP_097 | No text annotation | ||
| HL_8VOP_098 | No text annotation | ||
| HL_8VOP_099 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8VOP_001 | Single bulged G | ||
| IL_8VOP_002 | Single bulged A | ||
| IL_8VOP_003 | No text annotation | ||
| IL_8VOP_004 | Minor groove platform | ||
| IL_8VOP_005 | Multiple bulged bases | ||
| IL_8VOP_006 | Minor groove platform with extra cWW | ||
| IL_8VOP_007 | Minor groove platform | ||
| IL_8VOP_008 | Single bulged G | ||
| IL_8VOP_009 | Isolated non-canonical cWW pair | ||
| IL_8VOP_010 | Minor groove platform related | ||
| IL_8VOP_011 | No text annotation | ||
| IL_8VOP_012 | Kink-turn with non-sequential stacking | ||
| IL_8VOP_013 | No text annotation | ||
| IL_8VOP_014 | C-loop | ||
| IL_8VOP_015 | Single bulged U | ||
| IL_8VOP_016 | C-loop | ||
| IL_8VOP_017 | Single bulged G | ||
| IL_8VOP_018 | No text annotation | ||
| IL_8VOP_019 | No text annotation | ||
| IL_8VOP_020 | tSH-tHW-tWW | ||
| IL_8VOP_021 | No text annotation | ||
| IL_8VOP_022 | SSU/LSU pseudoknot | ||
| IL_8VOP_023 | No text annotation | ||
| IL_8VOP_024 | tSH-tHW-tHS | ||
| IL_8VOP_025 | Major groove platform | ||
| IL_8VOP_026 | Major groove minor groove platform; mini C-loop | ||
| IL_8VOP_027 | No text annotation | ||
| IL_8VOP_028 | Major groove platform; stack outside cWW | ||
| IL_8VOP_029 | Single stack bend | ||
| IL_8VOP_030 | Tandem non-canonical cWW pairs | ||
| IL_8VOP_031 | No text annotation | ||
| IL_8VOP_032 | Kink-turn | ||
| IL_8VOP_033 | Left turn | ||
| IL_8VOP_034 | tSH-tHW-tHS | ||
| IL_8VOP_035 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8VOP_036 | Single bulged A | ||
| IL_8VOP_037 | Single bulged G | ||
| IL_8VOP_038 | Minor groove platform | ||
| IL_8VOP_039 | Minor groove platform | ||
| IL_8VOP_040 | Minor groove platform | ||
| IL_8VOP_041 | No text annotation | ||
| IL_8VOP_042 | Single bulged U | ||
| IL_8VOP_043 | Isolated cWS basepair | ||
| IL_8VOP_044 | Minor groove platform | ||
| IL_8VOP_045 | Single bulged A | ||
| IL_8VOP_046 | Isolated non-canonical cWW pair | ||
| IL_8VOP_047 | No text annotation | ||
| IL_8VOP_048 | Minor groove platform | ||
| IL_8VOP_049 | No text annotation | ||
| IL_8VOP_050 | No text annotation | ||
| IL_8VOP_051 | No text annotation | ||
| IL_8VOP_052 | No text annotation | ||
| IL_8VOP_053 | No text annotation | ||
| IL_8VOP_054 | Isolated non-canonical cWW pair | ||
| IL_8VOP_055 | Double sheared | ||
| IL_8VOP_056 | Triple sheared related | ||
| IL_8VOP_057 | Single bulged A | ||
| IL_8VOP_058 | No text annotation | ||
| IL_8VOP_059 | Triple sheared with non-canonical cWW | ||
| IL_8VOP_060 | Single bulged A | ||
| IL_8VOP_061 | Minor groove platform | ||
| IL_8VOP_062 | No text annotation | ||
| IL_8VOP_063 | Single stack bend | ||
| IL_8VOP_064 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8VOP_065 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8VOP_066 | No text annotation | ||
| IL_8VOP_067 | No text annotation | ||
| IL_8VOP_068 | No text annotation | ||
| IL_8VOP_069 | No text annotation | ||
| IL_8VOP_070 | Double sheared | ||
| IL_8VOP_071 | Isolated non-canonical cWW pair | ||
| IL_8VOP_072 | AAA cross-strand stack | ||
| IL_8VOP_073 | Isolated non-canonical cWW pair | ||
| IL_8VOP_074 | tHW-tHW cross-strand stack | ||
| IL_8VOP_075 | Single bulged A | ||
| IL_8VOP_076 | Single bulged G | ||
| IL_8VOP_077 | Triple sheared | ||
| IL_8VOP_078 | Major groove platform | ||
| IL_8VOP_079 | Single stack bend | ||
| IL_8VOP_080 | Single stack bend | ||
| IL_8VOP_081 | Multiple bulged bases | ||
| IL_8VOP_082 | 90 degree turn | ||
| IL_8VOP_083 | No text annotation | ||
| IL_8VOP_084 | Stack outside cWW | ||
| IL_8VOP_085 | Single stack bend | ||
| IL_8VOP_086 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8VOP_087 | Single bulged G | ||
| IL_8VOP_088 | C-loop with bulged stacked A's | ||
| IL_8VOP_089 | Isolated non-canonical cWW pair | ||
| IL_8VOP_090 | Double sheared with non-canonical cWW | ||
| IL_8VOP_091 | No text annotation | ||
| IL_8VOP_092 | Single bulged C | ||
| IL_8VOP_093 | UAA/GAN | ||
| IL_8VOP_094 | SSU/LSU pseudoknot | ||
| IL_8VOP_095 | Single bulged U | ||
| IL_8VOP_096 | Kink-turn related | ||
| IL_8VOP_097 | No text annotation | ||
| IL_8VOP_098 | Isolated non-canonical cWW pair | ||
| IL_8VOP_099 | Tandem non-canonical cWW pairs | ||
| IL_8VOP_100 | Kink-turn | ||
| IL_8VOP_101 | No text annotation | ||
| IL_8VOP_102 | Major groove platform | ||
| IL_8VOP_103 | Isolated cWS basepair | ||
| IL_8VOP_104 | No text annotation | ||
| IL_8VOP_105 | Kink-turn | ||
| IL_8VOP_106 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8VOP_107 | Major groove platform; stack outside cWW | ||
| IL_8VOP_108 | C-loop | ||
| IL_8VOP_109 | UAA/GAN | ||
| IL_8VOP_110 | tSH-tHW-tHS | ||
| IL_8VOP_111 | Single stack bend | ||
| IL_8VOP_112 | Single stack bend | ||
| IL_8VOP_113 | No text annotation | ||
| IL_8VOP_114 | UAA/GAN | ||
| IL_8VOP_115 | Tandem non-canonical cWW pairs | ||
| IL_8VOP_116 | tSH-tHW | ||
| IL_8VOP_117 | Single bulged U | ||
| IL_8VOP_118 | No text annotation | ||
| IL_8VOP_119 | tSH-tHW-tHS | ||
| IL_8VOP_120 | 180 degree turn | ||
| IL_8VOP_121 | Single bulged A | ||
| IL_8VOP_122 | UAA/GAN variation | ||
| IL_8VOP_123 | No text annotation | ||
| IL_8VOP_124 | Isolated tWW turn | ||
| IL_8VOP_125 | Major groove platform; stack outside cWW | ||
| IL_8VOP_126 | No text annotation | ||
| IL_8VOP_127 | Intercalated tWH | ||
| IL_8VOP_128 | tSH-tSH-tHH-tHS | ||
| IL_8VOP_129 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8VOP_130 | Triple sheared | ||
| IL_8VOP_131 | Single bulged A | ||
| IL_8VOP_132 | Kink-turn related | ||
| IL_8VOP_133 | Minor groove platform, major groove intercalation | ||
| IL_8VOP_134 | Major groove intercalation | ||
| IL_8VOP_135 | Major groove minor groove platform; mini C-loop | ||
| IL_8VOP_136 | No text annotation | ||
| IL_8VOP_137 | UAA/GAN related | ||
| IL_8VOP_138 | Bulged stacked bases | ||
| IL_8VOP_139 | Major groove platform | ||
| IL_8VOP_140 | No text annotation | ||
| IL_8VOP_141 | Minor groove platform | ||
| IL_8VOP_142 | Isolated tHS basepair with bulges | ||
| IL_8VOP_143 | Isolated non-canonical cWW pair | ||
| IL_8VOP_144 | Isolated non-canonical cWW pair | ||
| IL_8VOP_145 | Isolated non-canonical cWW pair | ||
| IL_8VOP_146 | No text annotation | ||
| IL_8VOP_147 | No text annotation | ||
| IL_8VOP_148 | Kink-turn | ||
| IL_8VOP_149 | Single bulged U | ||
| IL_8VOP_150 | Double sheared | ||
| IL_8VOP_151 | No text annotation | ||
| IL_8VOP_152 | Major groove minor groove platform with extra cWW | ||
| IL_8VOP_153 | Double sheared with non-canonical cWW | ||
| IL_8VOP_154 | Isolated non-canonical cWW with bulges | ||
| IL_8VOP_155 | No text annotation | ||
| IL_8VOP_156 | Major groove platform with intercalation | ||
| IL_8VOP_157 | Single bulged A | ||
| IL_8VOP_158 | tSH-tHS-tHW | ||
| IL_8VOP_159 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8VOP_160 | C-loop | ||
| IL_8VOP_161 | UAA/GAN related, with intercalation | ||
| IL_8VOP_162 | Multiple bulged bases | ||
| IL_8VOP_163 | UAA/GAN with extra cWW | ||
| IL_8VOP_164 | No text annotation | ||
| IL_8VOP_165 | Major groove intercalation | ||
| IL_8VOP_166 | Multiple bulged bases with non-canonical cWW | ||
| IL_8VOP_167 | tHS double platform | ||
| IL_8VOP_168 | Major groove intercalation | ||
| IL_8VOP_169 | No text annotation | ||
| IL_8VOP_170 | Major groove minor groove platform; mini C-loop | ||
| IL_8VOP_171 | Symmetric double minor groove platform | ||
| IL_8VOP_172 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8VOP_001 | No text annotation | ||
| J3_8VOP_002 | No text annotation | ||
| J3_8VOP_003 | No text annotation | ||
| J3_8VOP_004 | No text annotation | ||
| J3_8VOP_005 | No text annotation | ||
| J3_8VOP_006 | No text annotation | ||
| J3_8VOP_007 | No text annotation | ||
| J3_8VOP_008 | No text annotation | ||
| J3_8VOP_009 | No text annotation | ||
| J3_8VOP_010 | No text annotation | ||
| J3_8VOP_011 | No text annotation | ||
| J3_8VOP_012 | No text annotation | ||
| J3_8VOP_013 | No text annotation | ||
| J3_8VOP_014 | No text annotation | ||
| J3_8VOP_015 | No text annotation | ||
| J3_8VOP_016 | No text annotation | ||
| J3_8VOP_017 | No text annotation | ||
| J3_8VOP_018 | No text annotation | ||
| J3_8VOP_019 | No text annotation | ||
| J3_8VOP_020 | No text annotation | ||
| J3_8VOP_021 | No text annotation | ||
| J3_8VOP_022 | No text annotation | ||
| J3_8VOP_023 | No text annotation | ||
| J3_8VOP_024 | No text annotation | ||
| J3_8VOP_025 | No text annotation | ||
| J3_8VOP_026 | No text annotation | ||
| J3_8VOP_027 | No text annotation | ||
| J3_8VOP_028 | No text annotation | ||
| J3_8VOP_029 | Kink-turn 3-way junction | ||
| J3_8VOP_030 | No text annotation | ||
| J3_8VOP_031 | No text annotation | ||
| J3_8VOP_032 | No text annotation | ||
| J3_8VOP_033 | No text annotation | ||
| J3_8VOP_034 | No text annotation | ||
| J3_8VOP_035 | No text annotation | ||
| J4_8VOP_001 | No text annotation | ||
| J4_8VOP_002 | No text annotation | ||
| J4_8VOP_003 | No text annotation | ||
| J4_8VOP_004 | No text annotation | ||
| J4_8VOP_005 | No text annotation | ||
| J4_8VOP_006 | No text annotation | ||
| J4_8VOP_007 | No text annotation | ||
| J4_8VOP_008 | No text annotation | ||
| J4_8VOP_009 | No text annotation | ||
| J4_8VOP_010 | No text annotation | ||
| J4_8VOP_011 | No text annotation | ||
| J4_8VOP_012 | No text annotation | ||
| J4_8VOP_013 | No text annotation | ||
| J4_8VOP_014 | No text annotation | ||
| J4_8VOP_015 | No text annotation | ||
| J5_8VOP_001 | No text annotation | ||
| J5_8VOP_002 | No text annotation | ||
| J5_8VOP_003 | No text annotation | ||
| J5_8VOP_004 | No text annotation | ||
| J5_8VOP_005 | No text annotation | ||
| J5_8VOP_006 | No text annotation | ||
| J5_8VOP_007 | No text annotation | ||
| J6_8VOP_001 | No text annotation | ||
| J7_8VOP_001 | No text annotation | ||
| J7_8VOP_002 | No text annotation |
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