HL_8VOP_047

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8VOP|1|a|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_047 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.0583

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VOP|1|a|G|410
8VOP|1|a|G|411
8VOP|1|a|A|412
8VOP|1|a|C|413
8VOP|1|a|C|414
8VOP|1|a|A|415
8VOP|1|a|U|416
8VOP|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15