HL_8VOP_059

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_059 not in the Motif Atlas

Geometric match to HL_5J7L_160

Geometric discrepancy: 0.0772

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VOP|1|a|G|978
8VOP|1|a|A|979
8VOP|1|a|A|980
8VOP|1|a|A|981
8VOP|1|a|C|982
8VOP|1|a|A|983
8VOP|1|a|A|984
8VOP|1|a|C|985

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain f

50S ribosomal protein L30

Chain z

50S ribosomal protein L20