HL_8VOP_090

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_090 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0598

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VOP|1|a|C|2594
8VOP|1|a|G|2595
8VOP|1|a|U|2596
8VOP|1|a|G|2597
8VOP|1|a|A|2598
8VOP|1|a|G|2599

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain h

50S ribosomal protein L2