HL_8VOP_093

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VOP|1|a|G|2751, 8VOP|1|a|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_093 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1203

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

8VOP|1|a|C|2745
8VOP|1|a|U|2746
8VOP|1|a|G|2747
8VOP|1|a|A|2748
8VOP|1|a|A|2749
8VOP|1|a|A|2750
8VOP|1|a|G|2751
8VOP|1|a|C|2752
8VOP|1|a|A|2753
8VOP|1|a|U|2754
8VOP|1|a|C|2755
8VOP|1|a|U|2756
8VOP|1|a|A|2757
8VOP|1|a|A|2758
8VOP|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13