HL_8VOQ_012

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8VOQ|1|D|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOQ_012 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.0793

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VOQ|1|D|G|259
8VOQ|1|D|G|260
8VOQ|1|D|U|261
8VOQ|1|D|A|262
8VOQ|1|D|A|263
8VOQ|1|D|C|264
8VOQ|1|D|G|265
8VOQ|1|D|G|266
8VOQ|1|D|C|267

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain V

30S ribosomal protein S17