3D structure

PDB id
8VOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VOR_059 not in the Motif Atlas
Geometric match to HL_5J7L_160
Geometric discrepancy: 0.0773
The information below is about HL_5J7L_160
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8VOR|1|a|G|978
8VOR|1|a|A|979
8VOR|1|a|A|980
8VOR|1|a|A|981
8VOR|1|a|C|982
8VOR|1|a|A|983
8VOR|1|a|A|984
8VOR|1|a|C|985

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
Ribosomal protein L21
Chain f
50S ribosomal protein L30
Chain z
50S ribosomal protein L20

Coloring options:


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