RNA 3D Hub //

8VOR Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8VOR_0011/A/13:22No text annotation
HL_8VOR_0021/A/31:39No text annotation
geometric
HL_9J4O_001
HL_06059.7
HL_8VOR_0031/A/53:61T-loop with 2 stacked bulged bases
geometric
HL_1J2B_002
HL_28252.9
HL_8VOR_0041/B/13:22No text annotation
HL_8VOR_0051/B/29:41No text annotation
HL_8VOR_0061/B/53:61T-loop with 2 stacked bulged bases
geometric
HL_1J2B_002
HL_28252.9
HL_8VOR_0071/D/12:22No text annotation
geometric
HL_4LFB_001
HL_89881.5
HL_8VOR_0081/D/80:89No text annotation
HL_8VOR_0091/D/158:163GNRA
geometric
HL_9DID_002
HL_37824.8
HL_8VOR_0101/D/186:191GNRA
geometric
HL_8Z8U_001
HL_37824.8
HL_8VOR_0111/D/203:214No text annotation
HL_8VOR_0121/D/259:267GNRA related
geometric
HL_5J7L_006
HL_84299.4
HL_8VOR_0131/D/296:301GNRA
geometric
HL_4LFB_007
HL_37824.8
HL_8VOR_0141/D/320:333No text annotation
geometric
HL_5J7L_008
HL_81205.3
HL_8VOR_0151/D/342:347UNCG
geometric
HL_5Y85_004
HL_34617.5
HL_8VOR_0161/D/379:384GNRA
geometric
HL_5J7L_010
HL_37824.8
HL_8VOR_0171/D/419:424UNCG
geometric
HL_5J7L_030
HL_34617.5
HL_8VOR_0181/D/462:470GNRA wlth extra near cWW
geometric
HL_5J7L_012
HL_81538.2
HL_8VOR_0191/D/617:623GNRA-like with tWH
geometric
HL_5J7L_014
HL_10453.3
HL_8VOR_0201/D/689:698No text annotation
geometric
HL_5J7L_015
HL_75293.5
HL_8VOR_0211/D/726:731GNRA
geometric
HL_5J7L_016
HL_37824.8
HL_8VOR_0221/D/786:796No text annotation
geometric
HL_5J7L_017
HL_75293.5
HL_8VOR_0231/D/840:846No text annotation
HL_8VOR_0241/D/862:867GNRA
geometric
HL_5J7L_019
HL_37824.8
HL_8VOR_0251/D/897:902GNRA
geometric
HL_4LFB_020
HL_37824.8
HL_8VOR_0261/D/1012:1017GNRA
geometric
HL_8P9A_159
HL_37824.8
HL_8VOR_0271/D/1076:1081GNRA
geometric
HL_5J7L_023
HL_37824.8
HL_8VOR_0281/D/1089:1096T-loop related
geometric
HL_4LFB_025
HL_77436.5
HL_8VOR_0291/D/1134:1140No text annotation
geometric
HL_4LFB_026
HL_87954.2
HL_8VOR_0301/D/1165:1171GNRA
geometric
HL_3V7E_003
HL_37824.8
HL_8VOR_0311/D/1265:1270GNRA
geometric
HL_5J7L_196
HL_37824.8
HL_8VOR_0321/D/1314:1323T-loop with 3 stacked bulged bases
geometric
HL_4LFB_029
HL_02887.3
HL_8VOR_0331/D/1356:1366No text annotation
geometric
HL_4LFB_030
HL_06226.4
HL_8VOR_0341/D/1449:1454UNCG
geometric
HL_5LYS_002
HL_34617.5
HL_8VOR_0351/a/59:68No text annotation
geometric
HL_5J7L_134
HL_35677.3
HL_8VOR_0361/a/87:95No text annotation
geometric
HL_5J7L_135
HL_80241.1
HL_8VOR_0371/a/123:128No text annotation
geometric
HL_5J7L_136
HL_82710.2
HL_8VOR_0381/a/137:142UNCG
geometric
HL_5J7L_030
HL_34617.5
HL_8VOR_0391/a/158:168No text annotation
geometric
HL_5J7L_138
HL_68257.1
HL_8VOR_0401/a/194:201No text annotation
geometric
HL_5J7L_139
HL_30068.2
HL_8VOR_0411/a/225:230No text annotation
geometric
HL_5J7L_140
HL_62934.1
HL_8VOR_0421/a/246:252No text annotation
geometric
HL_5J7L_141
HL_37369.2
HL_8VOR_0431/a/305:312T-loop with 2 stacked bulged bases
geometric
HL_5J7L_142
HL_01609.3
HL_8VOR_0441/a/319:323No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_8VOR_0451/a/327:335T-loop with unstacked turn
geometric
HL_5J7L_144
HL_27670.2
HL_8VOR_0461/a/382:392No text annotation
geometric
HL_5J7L_145
HL_91503.7
HL_8VOR_0471/a/410:417Pseudoknot geometry
geometric
HL_5J7L_146
HL_30680.3
HL_8VOR_0481/a/462:467GNRA
geometric
HL_5J7L_147
HL_37824.8
HL_8VOR_0491/a/487:493GNRA
geometric
HL_5J7L_148
HL_37824.8
HL_8VOR_0501/a/544:549No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_8VOR_0511/a/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.9
HL_8VOR_0521/a/611:617No text annotation
HL_8VOR_0531/a/629:634GNRA
geometric
HL_5J7L_152
HL_37824.8
HL_8VOR_0541/a/641:647No text annotation
geometric
HL_5J7L_153
HL_13529.1
HL_8VOR_0551/a/712:719GNRA wlth tandem sheared
geometric
HL_5J7L_154
HL_81538.2
HL_8VOR_0561/a/779:785No text annotation
geometric
HL_5J7L_156
HL_87954.2
HL_8VOR_0571/a/826:831No text annotation
geometric
HL_5J7L_157
HL_55195.3
HL_8VOR_0581/a/883:893No text annotation
HL_8VOR_0591/a/978:985No text annotation
geometric
HL_5J7L_160
HL_42998.2
HL_8VOR_0601/a/1065:1073No text annotation
HL_8VOR_0611/a/1092:1099GNRA wlth tandem sheared
geometric
HL_6PRV_002
HL_81538.2
HL_8VOR_0621/a/1172:1177No text annotation
HL_8VOR_0631/a/1222:1227GNRA
geometric
HL_5J7L_164
HL_37824.8
HL_8VOR_0641/a/1281:1289T-loop with 2 stacked bulged bases
geometric
HL_5J7L_165
HL_28252.9
HL_8VOR_0651/a/1324:1330Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_166
HL_57176.2
HL_8VOR_0661/a/1363:1368GNRA
geometric
HL_5J7L_167
HL_37824.8
HL_8VOR_0671/a/1389:1398No text annotation
geometric
HL_5J7L_168
HL_81545.2
HL_8VOR_0681/a/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_8VOR_0691/a/1492:1498Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
HL_57176.2
HL_8VOR_0701/a/1533:1538UNCG
geometric
HL_1YLS_001
HL_34617.5
HL_8VOR_0711/a/1565:1568Mini UNCG
geometric
HL_5J7L_172
HL_48778.2
HL_8VOR_0721/a/1630:1636GNRA
geometric
HL_5J7L_174
HL_37824.8
HL_8VOR_0731/a/1691:1696UNCG
geometric
HL_5J7L_175
HL_34617.5
HL_8VOR_0741/a/1727:1733No text annotation
geometric
HL_5J7L_214
HL_08100.1
HL_8VOR_0751/a/1752:1756No text annotation
geometric
HL_5J7L_177
HL_80709.3
HL_8VOR_0761/a/1777:1787No text annotation
geometric
HL_5J7L_178
HL_01962.2
HL_8VOR_0771/a/1806:1811GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_8VOR_0781/a/1868:1873GNRA variation
geometric
HL_5J7L_180
HL_37824.8
HL_8VOR_0791/a/1949:1957No text annotation
geometric
HL_5J7L_182
HL_20167.2
HL_8VOR_0801/a/2143:2148UNCG
geometric
HL_4LGT_001
HL_34617.5
HL_8VOR_0811/a/2209:2215No text annotation
geometric
HL_5J7L_185
HL_49922.4
HL_8VOR_0821/a/2264:2276No text annotation
geometric
HL_5J7L_187
HL_91939.2
HL_8VOR_0831/a/2304:2312No text annotation
geometric
HL_5J7L_219
HL_50860.2
HL_8VOR_0841/a/2324:2331Pseudoknot geometry
geometric
HL_5J7L_189
HL_93324.4
HL_8VOR_0851/a/2356:2361GNRA
geometric
HL_5J7L_190
HL_37824.8
HL_8VOR_0861/a/2374:2379GNRA
geometric
HL_5J7L_191
HL_37824.8
HL_8VOR_0871/a/2404:2413No text annotation
geometric
HL_5J7L_192
HL_53454.2
HL_8VOR_0881/a/2471:2479No text annotation
geometric
HL_4WF9_056
HL_32735.2
HL_8VOR_0891/a/2528:2535GNRA variation
geometric
HL_5J7L_194
HL_31585.4
HL_8VOR_0901/a/2594:2599GNRA
geometric
HL_4V9F_065
HL_37824.8
HL_8VOR_0911/a/2658:2663GNRA
geometric
HL_8Z8U_001
HL_37824.8
HL_8VOR_0921/a/2701:2706Ribsomal LSU H95
geometric
HL_5J7L_198
HL_65794.5
HL_8VOR_0931/a/2745:2759No text annotation
geometric
HL_4WF9_062
HL_74055.2
HL_8VOR_0941/a/2795:2801No text annotation
geometric
HL_5J7L_214
HL_08100.1
HL_8VOR_0951/a/2819:2827No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_8VOR_0961/a/2856:2861GNRA
geometric
HL_5J7L_202
HL_37824.8
HL_8VOR_0971/d/34:48No text annotation
geometric
HL_5J7L_215
HL_97756.2
HL_8VOR_0981/d/38:44No text annotation
geometric
HL_5J7L_203
HL_47787.2
HL_8VOR_0991/d/86:90Mini UNCG
geometric
HL_8P9A_182
HL_48778.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8VOR_0011/D/30:32,
1/D/552:553		Single bulged G
geometric
IL_4LFB_001
IL_00225.14
IL_8VOR_0021/D/44:45,
1/D/396:398		Single bulged A
geometric
IL_5J7L_002
IL_31462.7
IL_8VOR_0031/D/47:52,
1/D/359:361		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_8VOR_0041/D/54:56,
1/D/356:357		Minor groove platform
geometric
IL_8P9A_377
IL_51454.3
IL_8VOR_0051/D/63:66,
1/D/103:104		Multiple bulged bases
geometric
IL_4LFB_005
IL_82107.5
IL_8VOR_0061/D/67:69,
1/D/99:102		Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_8VOR_0071/D/70:73,
1/D/97:98		Minor groove platform
geometric
IL_5J7L_007
IL_15052.4
IL_8VOR_0081/D/75:76,
1/D/93:95		Single bulged G
geometric
IL_5J7L_395
IL_00225.14
IL_8VOR_0091/D/128:131,
1/D/231:233		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
IL_57744.1
IL_8VOR_0101/D/132:136,
1/D/227:230		Minor groove platform related
geometric
IL_5J7L_010
IL_64231.5
IL_8VOR_0111/D/144:153,
1/D/168:178		No text annotation
IL_8VOR_0121/D/242:247,
1/D/277:284		Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
IL_46174.3
IL_8VOR_0131/D/249:252,
1/D/274:275		No text annotation
geometric
IL_4LFB_012
IL_47074.2
IL_8VOR_0141/D/292:293,
1/D/304:308		C-loop
geometric
IL_4LFB_013
IL_03109.3
IL_8VOR_0151/D/367:369,
1/D/392:393		Single bulged U
geometric
IL_4LFB_014
IL_89505.4
IL_8VOR_0161/D/371:375,
1/D/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8VOR_0171/D/375:376,
1/D/387:389		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_8VOR_0181/D/409:416,
1/D/427:433		No text annotation
IL_8VOR_0191/D/440:442,
1/D/492:497		No text annotation
geometric
IL_5J7L_021
IL_33323.1
IL_8VOR_0201/D/446:450,
1/D/483:488		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_8VOR_0211/D/450:455,
1/D/477:483		No text annotation
geometric
IL_5J7L_023
IL_70801.1
IL_8VOR_0221/D/504:511,
1/D/540:541		SSU/LSU pseudoknot
geometric
IL_5J7L_024
IL_41203.4
IL_8VOR_0231/D/569:575,
1/D/880:881		No text annotation
geometric
IL_5J7L_026
IL_38186.6
IL_8VOR_0241/D/580:584,
1/D/757:761		tSH-tHW-tHS
geometric
IL_5J7L_027
IL_17136.7
IL_8VOR_0251/D/594:596,
1/D/644:645		Major groove platform
geometric
IL_1I6U_001
IL_48076.6
IL_8VOR_0261/D/597:598,
1/D/640:643		Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_029
IL_68140.4
IL_8VOR_0271/D/605:612,
1/D/628:633		No text annotation
geometric
IL_5J7L_030
IL_78349.3
IL_8VOR_0281/D/654:655,
1/D/751:754		Major groove platform; stack outside cWW
geometric
IL_5J7L_031
IL_50694.7
IL_8VOR_0291/D/658:659,
1/D/746:748		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_8VOR_0301/D/662:666,
1/D/740:743		Tandem non-canonical cWW pairs
geometric
IL_5J7L_033
IL_85033.2
IL_8VOR_0311/D/673:678,
1/D/712:717		No text annotation
IL_8VOR_0321/D/684:688,
1/D/699:706		Kink-turn
geometric
IL_5J7L_035
IL_01488.3
IL_8VOR_0331/D/774:778,
1/D/804:805		Left turn
geometric
IL_4LFB_032
IL_29346.2
IL_8VOR_0341/D/779:783,
1/D/799:803		tSH-tHW-tHS
geometric
IL_5J7L_037
IL_17136.7
IL_8VOR_0351/D/887:894,
1/D/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_5J7L_038
IL_41756.4
IL_8VOR_0361/D/922:923,
1/D/1393:1395		Single bulged A
geometric
IL_5J7L_039
IL_31462.7
IL_8VOR_0371/D/925:927,
1/D/1390:1391		Single bulged G
geometric
IL_5J7L_040
IL_00225.14
IL_8VOR_0381/D/933:935,
1/D/1380:1384		Minor groove platform
geometric
IL_5J7L_041
IL_47078.3
IL_8VOR_0391/D/953:954,
1/D/1226:1228		Minor groove platform
geometric
IL_8CRE_447
IL_51454.3
IL_8VOR_0401/D/993:997,
1/D/1044:1045		Minor groove platform
geometric
IL_5J7L_043
IL_47078.3
IL_8VOR_0411/D/1003:1006,
1/D/1023:1037		No text annotation
IL_8VOR_0421/D/1048:1050,
1/D/1208:1209		Single bulged U
geometric
IL_5J7L_046
IL_89505.4
IL_8VOR_0431/D/1052:1056,
1/D/1204:1206		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_8VOR_0441/D/1057:1058,
1/D/1199:1203		Minor groove platform
geometric
IL_5J7L_048
IL_95583.2
IL_8VOR_0451/D/1060:1061,
1/D/1195:1197		Single bulged A
geometric
IL_5J7L_049
IL_31462.7
IL_8VOR_0461/D/1061:1063,
1/D/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_28037.2
IL_8VOR_0471/D/1124:1128,
1/D/1144:1149		No text annotation
geometric
IL_5J7L_051
IL_06691.1
IL_8VOR_0481/D/1129:1132,
1/D/1142:1143		Minor groove platform
geometric
IL_5J7L_052
IL_15052.4
IL_8VOR_0491/D/1158:1161,
1/D/1175:1181		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_8VOR_0501/D/1247:1253,
1/D/1284:1290		No text annotation
geometric
IL_5J7L_054
IL_09129.2
IL_8VOR_0511/D/1255:1263,
1/D/1272:1282		No text annotation
IL_8VOR_0521/D/1303:1308,
1/D/1329:1334		No text annotation
geometric
IL_5J7L_057
IL_85536.2
IL_8VOR_0531/D/1399:1401,
1/D/1501:1504		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_8VOR_0541/D/1412:1414,
1/D/1486:1488		Isolated non-canonical cWW pair
geometric
IL_5J7L_061
IL_87907.2
IL_8VOR_0551/D/1416:1419,
1/D/1481:1484		Double sheared
geometric
IL_5J7L_062
IL_09705.15
IL_8VOR_0561/D/1430:1435,
1/D/1466:1470		Triple sheared related
geometric
IL_5J7L_063
IL_80231.1
IL_8VOR_0571/D/1440:1442,
1/D/1460:1461		Single bulged A
geometric
IL_5J7L_064
IL_31462.7
IL_8VOR_0581/D/1445:1448,
1/D/1455:1457		No text annotation
geometric
IL_5J7L_065
IL_31531.3
IL_8VOR_0591/a/24:30,
1/a/510:516		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_8VOR_0601/a/36:37,
1/a/442:444		Single bulged A
geometric
IL_5J7L_246
IL_31462.7
IL_8VOR_0611/a/43:44,
1/a/434:436		Minor groove platform
geometric
IL_5J7L_247
IL_51454.3
IL_8VOR_0621/a/81:85,
1/a/97:105		No text annotation
geometric
IL_5J7L_248
IL_37015.1
IL_8VOR_0631/a/183:184,
1/a/212:214		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_8VOR_0641/a/188:194,
1/a/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
IL_04346.10
IL_8VOR_0651/a/239:245,
1/a/253:258		7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
IL_26307.2
IL_8VOR_0661/a/269:271,
1/a/366:370		No text annotation
geometric
IL_5J7L_252
IL_47972.1
IL_8VOR_0671/a/274:281,
1/a/359:363		No text annotation
geometric
IL_5J7L_253
IL_77870.1
IL_8VOR_0681/a/293:295,
1/a/343:347		No text annotation
geometric
IL_5J7L_254
IL_69440.3
IL_8VOR_0691/a/481:484,
1/a/496:509		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_8VOR_0701/a/536:539,
1/a/554:557		Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_8VOR_0711/a/564:566,
1/a/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
IL_07785.1
IL_8VOR_0721/a/606:610,
1/a/618:622		AAA cross-strand stack
geometric
IL_5J7L_258
IL_66798.2
IL_8VOR_0731/a/672:674,
1/a/806:808		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_8VOR_0741/a/674:678,
1/a/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_8VOR_0751/a/697:698,
1/a/763:765		Single bulged A
geometric
IL_5J7L_261
IL_31462.7
IL_8VOR_0761/a/702:703,
1/a/728:730		Single bulged G
geometric
IL_5J7L_262
IL_00225.14
IL_8VOR_0771/a/703:707,
1/a/724:728		Triple sheared
geometric
IL_9DFE_019
IL_50730.2
IL_8VOR_0781/a/738:740,
1/a/757:758		Major groove platform
geometric
IL_5J7L_264
IL_48076.6
IL_8VOR_0791/a/741:742,
1/a/754:756		Single stack bend
geometric
IL_8P9A_328
IL_90729.1
IL_8VOR_0801/a/742:744,
1/a/753:754		Single stack bend
geometric
IL_4V84_420
IL_10569.1
IL_8VOR_0811/a/775:777,
1/a/787:791		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_8VOR_0821/a/844:847,
1/a/933:934		90 degree turn
geometric
IL_5J7L_267
IL_90729.1
IL_8VOR_0831/a/844:848,
1/a/930:934		No text annotation
geometric
IL_5J7L_399
IL_96236.1
IL_8VOR_0841/a/847:848,
1/a/930:933		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_8VOR_0851/a/849:850,
1/a/927:929		Single stack bend
geometric
IL_8P9A_328
IL_90729.1
IL_8VOR_0861/a/856:862,
1/a/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_8VOR_0871/a/862:863,
1/a/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_8VOR_0881/a/864:868,
1/a/909:912		C-loop with bulged stacked A's
geometric
IL_5J7L_272
IL_26222.2
IL_8VOR_0891/a/870:872,
1/a/905:907		Isolated non-canonical cWW pair
geometric
IL_5J7L_273
IL_28037.2
IL_8VOR_0901/a/875:879,
1/a/898:902		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_8VOR_0911/a/880:883,
1/a/893:897		No text annotation
IL_8VOR_0921/a/994:996,
1/a/1159:1160		Single bulged C
geometric
IL_5J7L_276
IL_61258.15
IL_8VOR_0931/a/998:1002,
1/a/1153:1157		UAA/GAN
geometric
IL_5J7L_277
IL_38507.2
IL_8VOR_0941/a/1004:1011,
1/a/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_8VOR_0951/a/1011:1013,
1/a/1149:1150		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_8VOR_0961/a/1018:1024,
1/a/1140:1144		Kink-turn related
geometric
IL_5J7L_280
IL_57188.5
IL_8VOR_0971/a/1024:1030,
1/a/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_8VOR_0981/a/1031:1034,
1/a/1121:1123		Isolated non-canonical cWW pair
geometric
IL_5J7L_282
IL_57744.1
IL_8VOR_0991/a/1038:1041,
1/a/1114:1117		Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_85033.2
IL_8VOR_1001/a/1043:1051,
1/a/1108:1112		Kink-turn
geometric
IL_4V9F_042
IL_99692.2
IL_8VOR_1011/a/1059:1062,
1/a/1076:1079		No text annotation
geometric
IL_5J7L_285
IL_92446.2
IL_8VOR_1021/a/1087:1090,
1/a/1101:1102		Major groove platform
geometric
IL_5J7L_385
IL_48076.6
IL_8VOR_1031/a/1196:1198,
1/a/1247:1250		Isolated cWS basepair
geometric
IL_5J7L_286
IL_42997.3
IL_8VOR_1041/a/1202:1206,
1/a/1240:1243		No text annotation
geometric
IL_5J7L_287
IL_91920.1
IL_8VOR_1051/a/1208:1215,
1/a/1234:1238		Kink-turn
geometric
IL_5J7L_288
IL_70923.9
IL_8VOR_1061/a/1262:1269,
1/a/2011:2017		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
IL_04346.10
IL_8VOR_1071/a/1310:1313,
1/a/1603:1604		Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_50694.7
IL_8VOR_1081/a/1319:1323,
1/a/1331:1333		C-loop
geometric
IL_5J7L_291
IL_63596.11
IL_8VOR_1091/a/1351:1355,
1/a/1376:1380		UAA/GAN
geometric
IL_5J7L_292
IL_89021.2
IL_8VOR_1101/a/1357:1361,
1/a/1370:1374		tSH-tHW-tHS
geometric
IL_5J7L_293
IL_17136.7
IL_8VOR_1111/a/1410:1411,
1/a/1590:1592		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_8VOR_1121/a/1411:1413,
1/a/1589:1590		Single stack bend
geometric
IL_4V84_420
IL_10569.1
IL_8VOR_1131/a/1415:1416,
1/a/1582:1587		No text annotation
geometric
IL_5J7L_294
IL_87211.1
IL_8VOR_1141/a/1417:1421,
1/a/1577:1581		UAA/GAN
geometric
IL_5J7L_295
IL_38507.2
IL_8VOR_1151/a/1432:1435,
1/a/1557:1561		Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
IL_58112.2
IL_8VOR_1161/a/1437:1440,
1/a/1551:1555		tSH-tHW
geometric
IL_5J7L_297
IL_99646.2
IL_8VOR_1171/a/1450:1451,
1/a/1459:1461		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_8VOR_1181/a/1468:1471,
1/a/1520:1524		No text annotation
geometric
IL_5J7L_299
IL_68574.4
IL_8VOR_1191/a/1474:1478,
1/a/1513:1517		tSH-tHW-tHS
geometric
IL_5J7L_300
IL_38862.4
IL_8VOR_1201/a/1481:1482,
1/a/1507:1510		180 degree turn
geometric
IL_5J7L_301
IL_00881.1
IL_8VOR_1211/a/1489:1491,
1/a/1499:1500		Single bulged A
geometric
IL_5J7L_302
IL_31462.7
IL_8VOR_1221/a/1526:1529,
1/a/1542:1546		UAA/GAN variation
geometric
IL_5J7L_303
IL_23774.1
IL_8VOR_1231/a/1651:1656,
1/a/2004:2006		No text annotation
geometric
IL_5J7L_304
IL_12566.4
IL_8VOR_1241/a/1663:1665,
1/a/1995:1997		Isolated tWW turn
geometric
IL_5J7L_305
IL_67095.2
IL_8VOR_1251/a/1666:1669,
1/a/1993:1994		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_8VOR_1261/a/1666:1674,
1/a/1990:1994		No text annotation
geometric
IL_5J7L_386
IL_22854.4
IL_8VOR_1271/a/1669:1674,
1/a/1990:1993		Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_8VOR_1281/a/1686:1691,
1/a/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_8VOR_1291/a/1712:1718,
1/a/1742:1746		6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
IL_88269.4
IL_8VOR_1301/a/1720:1724,
1/a/1736:1740		Triple sheared
geometric
IL_5J7L_310
IL_50730.2
IL_8VOR_1311/a/1770:1771,
1/a/1980:1982		Single bulged A
geometric
IL_5J7L_312
IL_31462.7
IL_8VOR_1321/a/1798:1804,
1/a/1813:1821		Kink-turn related
geometric
IL_5J7L_313
IL_17069.5
IL_8VOR_1331/a/1837:1840,
1/a/1902:1903		Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
IL_95583.2
IL_8VOR_1341/a/1841:1842,
1/a/1898:1901		Major groove intercalation
geometric
IL_4V9F_067
IL_82107.5
IL_8VOR_1351/a/1846:1849,
1/a/1893:1894		Major groove minor groove platform; mini C-loop
geometric
IL_1S03_003
IL_68140.4
IL_8VOR_1361/a/1851:1860,
1/a/1882:1891		No text annotation
geometric
IL_5J7L_387
IL_61249.1
IL_8VOR_1371/a/1864:1867,
1/a/1874:1878		UAA/GAN related
geometric
IL_5J7L_317
IL_77691.5
IL_8VOR_1381/a/1933:1934,
1/a/1964:1967		Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_8VOR_1391/a/2050:2052,
1/a/2617:2618		Major groove platform
geometric
IL_5J7L_320
IL_48076.6
IL_8VOR_1401/a/2054:2056,
1/a/2612:2615		No text annotation
geometric
IL_5J7L_321
IL_83389.2
IL_8VOR_1411/a/2070:2071,
1/a/2438:2441		Minor groove platform
geometric
IL_9DFE_081
IL_51454.3
IL_8VOR_1421/a/2081:2083,
1/a/2236:2239		Isolated tHS basepair with bulges
geometric
IL_5J7L_325
IL_85599.2
IL_8VOR_1431/a/2085:2087,
1/a/2232:2234		Isolated non-canonical cWW pair
geometric
IL_5J7L_326
IL_28037.2
IL_8VOR_1441/a/2103:2105,
1/a/2184:2186		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_07785.1
IL_8VOR_1451/a/2108:2110,
1/a/2179:2181		Isolated non-canonical cWW pair
geometric
IL_4KZD_003
IL_28037.2
IL_8VOR_1461/a/2110:2121,
1/a/2177:2179		No text annotation
IL_8VOR_1471/a/2123:2127,
1/a/2161:2175		No text annotation
IL_8VOR_1481/a/2129:2136,
1/a/2155:2159		Kink-turn
geometric
IL_5J7L_330
IL_70923.9
IL_8VOR_1491/a/2202:2204,
1/a/2220:2221		Single bulged U
geometric
IL_5J7L_331
IL_89505.4
IL_8VOR_1501/a/2350:2353,
1/a/2364:2367		Double sheared
geometric
IL_5J7L_333
IL_09705.15
IL_8VOR_1511/a/2401:2403,
1/a/2414:2415		No text annotation
IL_8VOR_1521/a/2459:2461,
1/a/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
IL_51387.3
IL_8VOR_1531/a/2466:2470,
1/a/2480:2484		Double sheared with non-canonical cWW
geometric
IL_5J7L_338
IL_17948.2
IL_8VOR_1541/a/2510:2512,
1/a/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_07785.1
IL_8VOR_1551/a/2512:2513,
1/a/2571:2574		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_8VOR_1561/a/2522:2523,
1/a/2540:2543		Major groove platform with intercalation
geometric
IL_5J7L_342
IL_02555.1
IL_8VOR_1571/a/2591:2592,
1/a/2601:2603		Single bulged A
geometric
IL_1U9S_001
IL_31462.7
IL_8VOR_1581/a/2636:2640,
1/a/2774:2782		tSH-tHS-tHW
geometric
IL_5J7L_345
IL_04638.3
IL_8VOR_1591/a/2652:2658,
1/a/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_8VOR_1601/a/2680:2684,
1/a/2725:2727		C-loop
geometric
IL_5J7L_347
IL_63596.11
IL_8VOR_1611/a/2687:2691,
1/a/2718:2722		UAA/GAN related, with intercalation
geometric
IL_5J7L_348
IL_23774.1
IL_8VOR_1621/a/2695:2696,
1/a/2711:2714		Multiple bulged bases
geometric
IL_5J7L_349
IL_42626.2
IL_8VOR_1631/a/2737:2742,
1/a/2762:2767		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_8VOR_1641/a/2806:2811,
1/a/2889:2892		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_8VOR_1651/a/2838:2839,
1/a/2878:2880		Major groove intercalation
geometric
IL_5J7L_352
IL_66635.5
IL_8VOR_1661/a/2843:2846,
1/a/2870:2874		Multiple bulged bases with non-canonical cWW
geometric
IL_5J7L_353
IL_64231.5
IL_8VOR_1671/a/2847:2852,
1/a/2865:2869		tHS double platform
geometric
IL_5J7L_354
IL_70411.2
IL_8VOR_1681/d/17:18,
1/d/65:67		Major groove intercalation
geometric
IL_5J7L_355
IL_31462.7
IL_8VOR_1691/d/23:28,
1/d/56:60		No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_8VOR_1701/d/30:31,
1/d/51:54		Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_357
IL_68140.4
IL_8VOR_1711/d/34:38,
1/d/44:48		Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_8VOR_1721/d/71:79,
1/d/97:105		Bacterial 5S Loop E
geometric
IL_5J7L_359
IL_56455.6

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8VOR_0011/D/46:47,
1/D/361:367,
1/D/393:395		No text annotation
geometric
J3_5J7L_001
J3_67856.4
J3_8VOR_0021/D/46:52,
1/D/359:367,
1/D/393:395		No text annotation
geometric
J3_5J7L_050
J3_46317.4
J3_8VOR_0031/D/586:588,
1/D/651:654,
1/D/754:755		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_8VOR_0041/D/586:588,
1/D/651:655,
1/D/751:755		No text annotation
geometric
J3_5J7L_051
J3_17385.4
J3_8VOR_0051/D/672:673,
1/D/717:725,
1/D/732:734		No text annotation
geometric
J3_5J7L_003
J3_11934.4
J3_8VOR_0061/D/826:829,
1/D/857:861,
1/D/868:874		No text annotation
geometric
J3_5J7L_004
J3_85054.4
J3_8VOR_0071/D/936:939,
1/D/1344:1350,
1/D/1372:1379		No text annotation
geometric
J3_4LFB_002
J3_25303.4
J3_8VOR_0081/D/943:946,
1/D/1235:1237,
1/D/1337:1340		No text annotation
geometric
J3_5J7L_005
J3_52655.4
J3_8VOR_0091/D/955:962,
1/D/973:984,
1/D/1221:1225		No text annotation
geometric
J3_5J7L_006
J3_83516.4
J3_8VOR_0101/D/990:993,
1/D/1045:1047,
1/D/1210:1215		No text annotation
J3_8VOR_0111/D/990:997,
1/D/1044:1047,
1/D/1210:1215		No text annotation
J3_8VOR_0121/D/1063:1068,
1/D/1107:1113,
1/D/1187:1193		No text annotation
geometric
J3_5J7L_008
J3_08394.3
J3_8VOR_0131/D/1073:1074,
1/D/1083:1087,
1/D/1098:1102		No text annotation
J3_8VOR_0141/D/1116:1118,
1/D/1155:1158,
1/D/1181:1184		No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_8VOR_0151/D/1116:1118,
1/D/1155:1161,
1/D/1175:1184		No text annotation
geometric
J3_5J7L_054
J3_17791.2
J3_8VOR_0161/D/1237:1241,
1/D/1296:1303,
1/D/1334:1337		No text annotation
geometric
J3_4LFB_009
J3_37047.6
J3_8VOR_0171/a/30:31,
1/a/474:481,
1/a/509:510		No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_8VOR_0181/a/30:31,
1/a/474:484,
1/a/496:510		No text annotation
geometric
J3_5J7L_066
J3_92134.2
J3_8VOR_0191/a/32:35,
1/a/445:461,
1/a/468:473		No text annotation
geometric
J3_5J7L_067
J3_30040.2
J3_8VOR_0201/a/56:57,
1/a/70:76,
1/a/110:114		No text annotation
geometric
J3_5J7L_037
J3_35667.2
J3_8VOR_0211/a/297:301,
1/a/316:325,
1/a/337:341		No text annotation
geometric
J3_5J7L_068
J3_46299.2
J3_8VOR_0221/a/683:689,
1/a/773:775,
1/a/791:794		No text annotation
geometric
J3_5J7L_038
J3_64189.2
J3_8VOR_0231/a/698:700,
1/a/732:736,
1/a/760:763		No text annotation
geometric
J3_5J7L_039
J3_44724.7
J3_8VOR_0241/a/1054:1057,
1/a/1081:1087,
1/a/1102:1105		No text annotation
J3_8VOR_0251/a/1298:1303,
1/a/1625:1627,
1/a/1639:1642		No text annotation
geometric
J3_5J7L_041
J3_32852.6
J3_8VOR_0261/a/1306:1309,
1/a/1605:1611,
1/a/1620:1622		No text annotation
geometric
J3_7A0S_007
J3_71677.1
J3_8VOR_0271/a/1344:1349,
1/a/1382:1385,
1/a/1402:1403		No text annotation
geometric
J3_5J7L_043
J3_92705.1
J3_8VOR_0281/a/1424:1429,
1/a/1564:1565,
1/a/1568:1574		No text annotation
geometric
J3_5J7L_069
J3_34864.2
J3_8VOR_0291/a/2091:2093,
1/a/2196:2200,
1/a/2223:2228		Kink-turn 3-way junction
geometric
J3_5J7L_044
J3_89368.5
J3_8VOR_0301/a/2282:2284,
1/a/2384:2395,
1/a/2421:2427		No text annotation
geometric
J3_5J7L_070
J3_20992.1
J3_8VOR_0311/a/2295:2299,
1/a/2317:2323,
1/a/2332:2337		No text annotation
geometric
J3_5J7L_071
J3_44961.1
J3_8VOR_0321/a/2517:2520,
1/a/2545:2547,
1/a/2561:2567		No text annotation
geometric
J3_5J7L_046
J3_32601.5
J3_8VOR_0331/a/2789:2791,
1/a/2805:2806,
1/a/2892:2894		No text annotation
geometric
J3_5J7L_047
J3_30104.1
J3_8VOR_0341/a/2812:2815,
1/a/2831:2836,
1/a/2882:2888		No text annotation
J3_8VOR_0351/d/10:16,
1/d/68:70,
1/d/106:110		No text annotation
geometric
J3_5J7L_049
J3_89095.1
J4_8VOR_0011/A/7:10,
1/A/25:27,
1/A/43:49,
1/A/65:66		No text annotation
J4_8VOR_0021/B/7:10,
1/B/25:27,
1/B/43:49,
1/B/65:66		No text annotation
J4_8VOR_0031/D/115:122,
1/D/239:240,
1/D/286:289,
1/D/311:312		No text annotation
J4_8VOR_0041/D/142:144,
1/D/178:184,
1/D/193:198,
1/D/219:221		No text annotation
J4_8VOR_0051/D/575:577,
1/D/764:769,
1/D/810:821,
1/D/879:880		No text annotation
J4_8VOR_0061/a/268:269,
1/a/370:375,
1/a/399:406,
1/a/421:424		No text annotation
J4_8VOR_0071/a/297:301,
1/a/316:319,
1/a/323:325,
1/a/337:341		No text annotation
J4_8VOR_0081/a/601:604,
1/a/624:628,
1/a/635:638,
1/a/650:656		No text annotation
J4_8VOR_0091/a/1270:1276,
1/a/1294:1295,
1/a/1645:1648,
1/a/2009:2010		No text annotation
J4_8VOR_0101/a/1310:1314,
1/a/1338:1343,
1/a/1404:1405,
1/a/1597:1604		No text annotation
J4_8VOR_0111/a/1313:1314,
1/a/1338:1343,
1/a/1404:1405,
1/a/1597:1603		No text annotation
J4_8VOR_0121/a/1444:1445,
1/a/1466:1467,
1/a/1525:1526,
1/a/1546:1547		No text annotation
J4_8VOR_0131/a/1772:1776,
1/a/1788:1792,
1/a/1827:1830,
1/a/1975:1979		No text annotation
J4_8VOR_0141/a/2285:2289,
1/a/2343:2347,
1/a/2370:2372,
1/a/2381:2383		No text annotation
J4_8VOR_0151/a/2643:2646,
1/a/2674:2676,
1/a/2731:2735,
1/a/2769:2771		No text annotation
J5_8VOR_0011/D/36:39,
1/D/403:406,
1/D/436:440,
1/D/497:500,
1/D/545:548		No text annotation
J5_8VOR_0021/D/36:39,
1/D/403:406,
1/D/436:442,
1/D/492:500,
1/D/545:548		No text annotation
J5_8VOR_0031/D/58:61,
1/D/106:113,
1/D/314:316,
1/D/337:339,
1/D/350:354		No text annotation
J5_8VOR_0041/a/47:54,
1/a/116:121,
1/a/130:131,
1/a/148:150,
1/a/176:178		No text annotation
J5_8VOR_0051/a/531:533,
1/a/560:564,
1/a/577:579,
1/a/1261:1262,
1/a/2017:2018		No text annotation
J5_8VOR_0061/a/584:589,
1/a/668:671,
1/a/809:812,
1/a/1195:1196,
1/a/1250:1256		No text annotation
J5_8VOR_0071/a/1674:1682,
1/a/1706:1707,
1/a/1751:1752,
1/a/1756:1764,
1/a/1988:1990		No text annotation
J6_8VOR_0011/a/45:46,
1/a/179:183,
1/a/214:224,
1/a/231:235,
1/a/262:266,
1/a/426:433		No text annotation
J7_8VOR_0011/a/8:15,
1/a/525:531,
1/a/2018:2023,
1/a/2040:2043,
1/a/2625:2630,
1/a/2788:2789,
1/a/2894:2895		No text annotation
J7_8VOR_0021/a/817:822,
1/a/835:838,
1/a/940:946,
1/a/971:976,
1/a/987:991,
1/a/1163:1164,
1/a/1185:1190		No text annotation

Problematic loops

No problematic loops


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