HL_8VOR_070

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8VOR|1|a|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOR_070 not in the Motif Atlas

Geometric match to HL_1YLS_001

Geometric discrepancy: 0.2121

The information below is about HL_1YLS_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8VOR|1|a|C|1533
8VOR|1|a|U|1534
8VOR|1|a|A|1535
8VOR|1|a|C|1536
8VOR|1|a|G|1537
8VOR|1|a|G|1538

Current chains

Chain a

23S rRNA

Nearby chains