HL_8VOS_012

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8VOS|1|D|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_012 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.0793

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VOS|1|D|G|259
8VOS|1|D|G|260
8VOS|1|D|U|261
8VOS|1|D|A|262
8VOS|1|D|A|263
8VOS|1|D|C|264
8VOS|1|D|G|265
8VOS|1|D|G|266
8VOS|1|D|C|267

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20

Chain V

Small ribosomal subunit protein uS17