HL_8VOS_014

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_014 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.0648

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VOS|1|D|A|320
8VOS|1|D|A|321
8VOS|1|D|C|322
8VOS|1|D|U|323
8VOS|1|D|G|324
8VOS|1|D|A|325
8VOS|1|D|G|326
8VOS|1|D|A|327
8VOS|1|D|C|328
8VOS|1|D|A|329
8VOS|1|D|C|330
8VOS|1|D|G|331
8VOS|1|D|G|332
8VOS|1|D|U|333

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein bS20

Chain U

Small ribosomal subunit protein bS16