HL_8VOS_024

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_024 not in the Motif Atlas

Geometric match to HL_5J7L_019

Geometric discrepancy: 0.1011

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VOS|1|D|C|862
8VOS|1|D|U|863
8VOS|1|D|A|864
8VOS|1|D|A|865
8VOS|1|D|C|866
8VOS|1|D|G|867

Current chains

Chain D

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS5