HL_8VOS_049

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8VOS|1|a|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_049 not in the Motif Atlas

Geometric match to HL_5J7L_148

Geometric discrepancy: 0.0598

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VOS|1|a|C|487
8VOS|1|a|G|488
8VOS|1|a|G|489
8VOS|1|a|C|490
8VOS|1|a|G|491
8VOS|1|a|A|492
8VOS|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22