HL_8VOS_068

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8VOS|1|a|G|1452, 8VOS|1|a|A|1453, 8VOS|1|a|C|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_068 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1665

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VOS|1|a|C|1451
8VOS|1|a|G|1452
8VOS|1|a|A|1453
8VOS|1|a|C|1454
8VOS|1|a|G|1455
8VOS|1|a|G|1456
8VOS|1|a|U|1457
8VOS|1|a|U|1458
8VOS|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL17