HL_8VOS_079

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8VOS|1|a|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_079 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.0626

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8VOS|1|a|G|1949
8VOS|1|a|G|1950
8VOS|1|a|U|1951
8VOS|1|a|A|1952
8VOS|1|a|A|1953
8VOS|1|a|G|1954
8VOS|1|a|U|1955
8VOS|1|a|U|1956
8VOS|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain t

Large ribosomal subunit protein uL14