HL_8VOS_080

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

8VOS|1|a|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_080 not in the Motif Atlas

Geometric match to HL_4LGT_001

Geometric discrepancy: 0.2497

The information below is about HL_4LGT_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8VOS|1|a|C|2143
8VOS|1|a|G|2144
8VOS|1|a|C|2145
8VOS|1|a|C|2146
8VOS|1|a|A|2147
8VOS|1|a|G|2148

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA