HL_8VOS_082

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8VOS|1|a|A|2268, 8VOS|1|a|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_082 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.058

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VOS|1|a|C|2264
8VOS|1|a|U|2265
8VOS|1|a|A|2266
8VOS|1|a|A|2267
8VOS|1|a|A|2268
8VOS|1|a|G|2269
8VOS|1|a|A|2270
8VOS|1|a|G|2271
8VOS|1|a|U|2272
8VOS|1|a|A|2273
8VOS|1|a|A|2274
8VOS|1|a|C|2275
8VOS|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein bL27

Chain v

50S ribosomal protein L16