HL_8VOS_089

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

8VOS|1|a|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_089 not in the Motif Atlas

Geometric match to HL_5J7L_194

Geometric discrepancy: 0.085

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8VOS|1|a|U|2528
8VOS|1|a|G|2529
8VOS|1|a|A|2530
8VOS|1|a|A|2531
8VOS|1|a|G|2532
8VOS|1|a|U|2533
8VOS|1|a|A|2534
8VOS|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL6

Chain q

50S ribosomal protein L36