HL_8VPK_013
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GCCCGUGGAAU
- Length
- 11 nucleotides
- Bulged bases
- 8VPK|1|A|G|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VPK_013 not in the Motif Atlas
- Homologous match to HL_9DFE_012
- Geometric discrepancy: 0.2686
- The information below is about HL_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8VPK|1|A|G|470
8VPK|1|A|C|471
8VPK|1|A|C|472
8VPK|1|A|C|473
8VPK|1|A|G|474
8VPK|1|A|U|475
8VPK|1|A|G|476
8VPK|1|A|G|477
8VPK|1|A|A|478
8VPK|1|A|A|479
8VPK|1|A|U|480
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S Ribosomal Protein L28
- Chain e
- 50S ribosomal protein L35
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