HL_9DFE_012

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

9DFE|1|1A|G|386, 9DFE|1|1A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9DFE|1|1A|G|382
9DFE|1|1A|U|383
9DFE|1|1A|U|384
9DFE|1|1A|C|385
9DFE|1|1A|G|386
9DFE|1|1A|U|387
9DFE|1|1A|G|388
9DFE|1|1A|G|389
9DFE|1|1A|A|390
9DFE|1|1A|G|391
9DFE|1|1A|C|392

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15