HL_8VPK_018
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUUUGAAGAA
- Length
- 10 nucleotides
- Bulged bases
- 8VPK|1|A|A|666
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VPK_018 not in the Motif Atlas
- Homologous match to HL_9DFE_016
- Geometric discrepancy: 0.1031
- The information below is about HL_9DFE_016
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8VPK|1|A|U|658
8VPK|1|A|U|659
8VPK|1|A|U|660
8VPK|1|A|U|661
8VPK|1|A|G|662
8VPK|1|A|A|663
8VPK|1|A|A|664
8VPK|1|A|G|665
8VPK|1|A|A|666
8VPK|1|A|A|667
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S Ribosomal Protein L37
- Chain D
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L15
- Chain R
- 50S Ribosomal Protein L20
- Chain S
- 50S Ribosomal Protein L21
- Chain b
- 50S ribosomal protein L32
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