HL_9DFE_016

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

9DFE|1|1A|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

9DFE|1|1A|U|566
9DFE|1|1A|A|567
9DFE|1|1A|U|568
9DFE|1|1A|U|569
9DFE|1|1A|G|570
9DFE|1|1A|A|571
9DFE|1|1A|A|572
9DFE|1|1A|G|573
9DFE|1|1A|C|574
9DFE|1|1A|A|575

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1P

50S ribosomal protein L15

Chain 1V

50S ribosomal protein L21