HL_8VPK_022

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAGAGU

Length

6 nucleotides

Bulged bases

8VPK|1|A|A|758, 8VPK|1|A|G|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_022 not in the Motif Atlas

Geometric match to HL_3SKI_003

Geometric discrepancy: 0.1984

The information below is about HL_3SKI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8VPK|1|A|A|755
8VPK|1|A|A|756
8VPK|1|A|G|757
8VPK|1|A|A|758
8VPK|1|A|G|759
8VPK|1|A|U|760

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L27