HL_8VPK_047
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUUACUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8VPK|1|A|A|1997, 8VPK|1|A|C|1998, 8VPK|1|A|U|1999, 8VPK|1|A|A|2003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VPK_047 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0825
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8VPK|1|A|U|1994
8VPK|1|A|U|1995
8VPK|1|A|U|1996
8VPK|1|A|A|1997
8VPK|1|A|C|1998
8VPK|1|A|U|1999
8VPK|1|A|A|2000
8VPK|1|A|A|2001
8VPK|1|A|A|2002
8VPK|1|A|A|2003
8VPK|1|A|A|2004
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
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