HL_8VPK_054

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8VPK|1|A|A|2492, 8VPK|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_054 not in the Motif Atlas

Homologous match to HL_9DFE_052

Geometric discrepancy: 0.0796

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VPK|1|A|C|2488
8VPK|1|A|U|2489
8VPK|1|A|A|2490
8VPK|1|A|A|2491
8VPK|1|A|A|2492
8VPK|1|A|A|2493
8VPK|1|A|U|2494
8VPK|1|A|G|2495
8VPK|1|A|U|2496
8VPK|1|A|A|2497
8VPK|1|A|A|2498
8VPK|1|A|C|2499
8VPK|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27