HL_8VR4_015

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8VR4|1|A|G|499, 8VR4|1|A|A|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_015 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.2697

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VR4|1|A|G|498
8VR4|1|A|G|499
8VR4|1|A|A|500
8VR4|1|A|C|501
8VR4|1|A|C|502
8VR4|1|A|A|503
8VR4|1|A|C|504
8VR4|1|A|C|505

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15