HL_8VR4_058

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8VR4|1|A|A|2492, 8VR4|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_058 not in the Motif Atlas

Homologous match to HL_9DFE_052

Geometric discrepancy: 0.0858

The information below is about HL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VR4|1|A|C|2488
8VR4|1|A|U|2489
8VR4|1|A|A|2490
8VR4|1|A|A|2491
8VR4|1|A|A|2492
8VR4|1|A|A|2493
8VR4|1|A|U|2494
8VR4|1|A|G|2495
8VR4|1|A|U|2496
8VR4|1|A|A|2497
8VR4|1|A|A|2498
8VR4|1|A|C|2499
8VR4|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27