HL_8VR4_065

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

8VR4|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VR4_065 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.1513

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VR4|1|A|U|2752
8VR4|1|A|G|2753
8VR4|1|A|G|2754
8VR4|1|A|A|2755
8VR4|1|A|G|2756
8VR4|1|A|C|2757
8VR4|1|A|A|2758
8VR4|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36