HL_8VR4_076
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUCCG
- Length
- 6 nucleotides
- Bulged bases
- 8VR4|1|B|U|87, 8VR4|1|B|C|88
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VR4_076 not in the Motif Atlas
- Geometric match to HL_2CZJ_007
- Geometric discrepancy: 0.2367
- The information below is about HL_2CZJ_007
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_23696.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
8VR4|1|B|C|85
8VR4|1|B|A|86
8VR4|1|B|U|87
8VR4|1|B|C|88
8VR4|1|B|C|89
8VR4|1|B|G|90
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 3
- 50S Ribosomal Protein L27
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- Large ribosomal subunit protein uL16
- Chain W
- 50S ribosomal protein L25
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