HL_8VRL_006

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8VRL|1|A|A|195, 8VRL|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1189

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8VRL|1|A|G|193
8VRL|1|A|A|194
8VRL|1|A|A|195
8VRL|1|A|A|196
8VRL|1|A|C|197
8VRL|1|A|A|198
8VRL|1|A|U|199
8VRL|1|A|C|200

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

Large ribosomal subunit protein bL28